ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file>


-h, --help

Show summary of options.


Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis).

-t <.|0|1|2>

Put label 'frame' in gff output.

-x <name>

Specify the species name for species1 (default: "Seq1").

-y <name>

Specify the species name for species2 (default: "Seq2").


Ignore full sequence identities.


Write output to file.

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ali2gff was written by Steffi Gebauer-Jung.

This manual page was written by Nelson A. de Oliveira <[email protected]>, for the Debian project (but may be used by others).