fastaq_deinterleave (1)

fastaq_deinterleave [options] <fasta/q in> <out_fwd> <out_rev>

Deinterleaves fasta/q file, so that reads are written alternately between two output files

positional arguments:

infile

Name of fasta/q file to be deinterleaved

out_fwd

Name of output fasta/q file of forwards reads

out_rev

Name of output fasta/q file of reverse reads

optional arguments:

-h, --help

show this help message and exit

--fasta_out

Use this to write output as fasta (default is same as input)

fastaq_deinterleave was originally written by Martin Hunt ([email protected])

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.