fastaq_to_random_subset (1)

fastaq_to_random_subset [options] <fasta/q in> <outfile> <probablilty of keeping read (pair) in [0,100]>

Takes a random subset of reads from a fasta/q file and optionally the corresponding read from a mates file. Ouptut is interleaved if mates file given

positional arguments:

infile

Name of input fasta/q file

outfile

Name of fasta/q output file

INT

Probability of keeping any given read (pair) in [0,100]

optional arguments:

-h, --help

show this help message and exit

--mate_file MATE_FILE

Name of fasta/q mates file

fastaq_to_random_subset was originally written by Martin Hunt ([email protected])

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.