SYNOPSIS

gmx wheel [-f [<.dat>]] [-o [<.eps>]] [-nice <int>] [-r0 <int>]

          [-rot0 <real>] [-T <string>] [-[no]nn]

DESCRIPTION

gmx wheel plots a helical wheel representation of your sequence. The input sequence is in the .dat file where the first line contains the number of residues and each consecutive line contains a residue name.

OPTIONS

Options to specify input and output files:

-f [<.dat>] (nnnice.dat) (Input)

    Generic data file

-o [<.eps>] (plot.eps) (Output)

    Encapsulated PostScript (tm) file

Other options:

-nice <int> (19)

    Set the nicelevel

-r0 <int> (1)

    The first residue number in the sequence

-rot0 <real> (0)

    Rotate around an angle initially (90 degrees makes sense)

-T <string>

    Plot a title in the center of the wheel (must be shorter than 10 characters, or it will overwrite the wheel)

-[no]nn (yes)

    Toggle numbers

RELATED TO gmx-wheel…

gromacs(7)

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