trna2sap (1)

trna2sap [\|-\|] [\|-a\|] [\|-c str\|] [\|-f str\|] [\|-i filename\|] [\|-j\|] [\|-m str\|] [\|-n str\|] [\|-o filename\|] [\|-p dir\|] [\|-r dir\|] [\|-s\|] [\|-t str\|] [\|-u\|] [\|-x str\|]

trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools.

A summary of options is included below.

-

Print usage message

-a

Add tRNAscan-SE citation

-c str

Comment

-f str

Substring Filter

-i filename

Single Input file (standard input by default)

-j

Just produce a five-column feature table, à la trna2tbl(1).

-m str

ReMark

-n str

Annotation Name (normally “tRNA”).

-o filename

Single Output file (standard output by default)

-p dir

Path to files

-r dir

Path for Results

-s

Ignore Pseudo tRNAs

-t str

Annotation Title (normally “tRNAscan-SE”).

-u

Ignore Undetermined tRNAs

-x str

File selection suffix with -p (.trna by default).

The National Center for Biotechnology Information.

sequin(1), tbl2asn(1), trna2tbl(1).