vcf-convert (1)

Convert between vcf versions

  1. Carta.tech
  2. Man Pages
  3. Executable programs or shell commands
  4. vcf-convert: Convert between vcf versions
  1. Carta.tech
  2. Packages
  3. vcftools
  4. vcf-convert: Convert between vcf versions

SYNOPSIS

cat in.vcf | vcf-convert [OPTIONS] > out.vcf

DESCRIPTION

About: Convert between VCF versions, currently to VCFv4.0 only.

OPTIONS

-r, --refseq <file>

The reference sequence in samtools faindexed fasta file. (Not required with SNPs only.)

-v, --version <string>

4.0

-h, -?, --help

This help message.