SYNOPSIS

esorex kmos_illumination [OPTIONS] FILE.sof

DESCRIPTION

This recipe creates the spatial non-uniformity calibration frame needed for all three detectors. It must be called after the kmo_wave_cal-recipe, which generates the spectral calibration frame needed in this recipe. As input at least a sky, a master dark, a master flat and the spatial and spectral cali- bration frames are required.

The created product, the illumination correction, can be used as input for kmo_std_star and kmo_sci_red.

BASIC PARAMETERS

--imethod The interpolation method used for reconstruction.

--range The spectral ranges to combine when collapsing the reconstructed cubes. e.g.

"x1_start,x1_end;x2_start,x2_end" (microns)

ADVANCED PARAMETERS

--flux Specify if flux conservation should be applied.

--add-all By default the first FLAT_SKY frame is omitted, since in the KMOS_spec_cal_skyflat template this is an acquisition frame to estimate the needed exposure time for the subsequent FLAT_SKY frames. If anyway all frames should be considered, set this parameter to TRUE.

--neighborhoodRange Defines the range to search for neighbors during reconstruction

--b_samples The number of samples in spectral direction for the reconstructed cube.

Ideally this number should be greater than 2048, the detector size.

--b_start --b_end Used to define manually the start and end wavelength for the reconstructed cube. By default the internally defined values are used.

--cmethod Following methods of frame combination are available:

   * \'ksigma\' (Default)
   An iterative sigma clipping. For each position all pixels in the spectrum
   are examined. If they deviate significantly, they will be rejected
   according to the conditions:
       val > mean + stdev * cpos_rej
   and
       val < mean - stdev * cneg_rej
   where --cpos_rej, --cneg_rej and --citer are the corresponding
   configuration parameters. In the first iteration median and percentile
   level are used.
   * \'median\'
   At each pixel position the median is calculated.
   * \'average\'
   At each pixel position the average is calculated.
   * \'sum\'
   At each pixel position the sum is calculated.
   * \'min_max\'
   The specified nb of minimum and maximum pixel values will be rejected.
   --cmax and --cmin apply to this method.

--cpos_rej --cneg_rej --citer see --cmethod=\'ksigma\'

--cmax --cmin see --cmethod=\'min_max\'

--pix_scale Change the pixel scale [arcsec]. Default of 0.2" results into cubes of 14x14pix, a scale of 0.1" results into cubes of 28x28pix, etc.

--suppress_extension If set to TRUE, the arbitrary filename extensions are supressed. If multiple products with the same category are produced, they will be numbered consecutively starting from 0.

  Input files:
   DO CATG           Type   Explanation                    Required #Frames
   --------          -----  -----------                    -------- -------
   FLAT_SKY           F2D   Sky exposures                     Y      1-n
                            (at least 3 frames recommended)
   MASTER_DARK        F2D   Master dark                       Y       1
   MASTER_FLAT        F2D   Master flat                       Y       1
   XCAL               F2D   x calibration frame               Y       1
   YCAL               F2D   y calibration frame               Y       1
   LCAL               F2D   Wavelength calib. frame           Y       1
   WAVE_BAND          F2L   Table with start-/end-wavelengths Y       1
   FLAT_EDGE          F2L   Table with fitted slitlet edges   N      0,1
  Output files:
   DO CATG           Type   Explanation
   --------          -----  -----------
   ILLUM_CORR        F2I    Illumination calibration frame
   If FLAT_EDGE is provided:
   SKYFLAT_EDGE      F2L    Frame containing parameters of fitted
                            slitlets of all IFUs of all detectors

OPTIONS

--imethod <str>

Method to use for interpolation: ["NN" (nearest neighbour), "lwNN" (linear weighted nearest neighbor), "swNN" (square weighted nearest neighbor), "MS" (Modified Shepard\'s method), "CS" (Cubic spline)] (str; default: \'CS\'). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.imethod [default = CS].

--neighborhoodRange <float>

Range (pixels) to search for neighbors (float; default: 1.001). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.neighborhoodRange [default = 1.001].

--range <str>

The spectral ranges to combine when collapsing the reconstructed cubes. e.g. "x1_start,x1_end;x2_start,x2_end" (microns) (str; default: \'\'). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.range [default = ].

--flux <bool>

TRUE: Apply flux conservation. FALSE: otherwise (bool; default: False). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.flux [default = False].

--add-all <bool>

FALSE: omit 1st FLAT_SKY frame (acquisition), TRUE: don\'t perform any checks, add them all (bool; default: False). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.add-all [default = False].

--pix_scale <float>

Change the pixel scale [arcsec]. Default of 0.2" results into cubes of 14x14pix, a scale of 0.1" results into cubes of 28x28pix, etc. (float; default: 0.2). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.pix_scale [default = 0.2].

--suppress_extension <bool>

Suppress filename extension. (TRUE (apply) or FALSE (don\'t apply) (bool; default: False). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.suppress_extension [default = False].

--b_samples <long>

The number of samples in wavelength for the reconstructed cube (long; default: 2048). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.b_samples [default = 2048].

--b_start <float>

The lowest wavelength [um] to use when reconstructing. Derived by default, depending on the band (float; default: -1.0). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.b_start [default = -1.0].

--b_end <float>

The highest wavelength [um] to use when reconstructing. Derived by default, depending on the band (float; default: -1.0). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.b_end [default = -1.0].

--cmethod <str>

Apply "average", "median", "sum", "min_max." or "ksigma". (str; default: \'ksigma\'). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.cmethod [default = ksigma].

--cpos_rej <float>

The positive rejection threshold for kappa-sigma-clipping (sigma). (float; default: 3.0). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.cpos_rej [default = 3.0].

--cneg_rej <float>

The negative rejection threshold for kappa-sigma-clipping (sigma). (float; default: 3.0). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.cneg_rej [default = 3.0].

--citer <long>

The number of iterations for kappa-sigma-clipping. (long; default: 3). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.citer [default = 3].

--cmax <long>

The number of maximum pixel values to clip with min/max-clipping. (long; default: 1). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.cmax [default = 1].

--cmin <long>

The number of minimum pixel values to clip with min/max-clipping. (long; default: 1). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.cmin [default = 1].

--det <long>

Only reduce the specified detector (long; default: 0). The full name of this option for the EsoRex configuration file is kmos.kmos_illumination.detector [default = 0].

Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command.

RELATED TO kmos_illumination…

The full documentation for the kmos pipeline can be downloaded as a PDF file using the following URL:

  • ftp://ftp.eso.org/pub/dfs/pipelines/kmos/kmos-pipeline-manual-2.9.pdf

An overview over the existing ESO pipelines can be found on the web page http://www.eso.org/sci/software/pipelines/.

Basic documentation about the EsoRex program can be found at the esorex (1) man page.

It is possible to call the pipelines from python using the python-cpl package. See http://packages.python.org/python-cpl/index.html for further information.

The other recipes of the kmos pipeline are kmo_copy(7), kmo_fits_check(7), kmo_sci_red(7), kmo_fits_stack(7), kmo_noise_map(7), kmo_rotate(7), kmo_extract_spec(7), kmo_multi_reconstruct(7), kmo_sky_tweak(7), kmo_shift(7), kmos_gen_reflines(7), kmo_stats(7), kmo_arithmetic(7), kmos_dark(7), kmo_fits_strip(7), kmo_combine(7), kmo_std_star(7), kmo_illumination_flat(7), kmo_make_image(7), kmos_flat(7), kmo_fit_profile(7), kmo_sky_mask(7), kmos_wave_cal(7), kmo_reconstruct(7)

VERSION

kmos_illumination 1.3.5

AUTHOR

Alex Agudo Berbel, Yves Jung <[email protected]>

BUG REPORTS

Please report any problems to [email protected] Alternatively, you may send a report to the ESO User Support Department <[email protected]>.

LICENSE

This file is part of the CRIRES Instrument Pipeline Copyright (C) 2002,2003 European Southern Observatory

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA