Fastaq_enumerate_names
fastaq_enumerate_names [options] <fasta/q in> <fasta/q out>
Renames sequences in a file, calling them 1,2,3... etc
infile
Name of fasta/q file to be read
outfile
Name of output fasta/q file
-h, --help
show this help message and exit
--start_index START_INDEX
Starting number [1]
--rename_file RENAME_FILE
If used, will write a file of old name to new name
--keep_suffix
Use this to keep a \,/1\/ or \,/2\/ suffix at the end of each name
fastaq_enumerate_names was originally written by Martin Hunt ([email protected])
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.